CDS

Accession Number TCMCG007C00934
gbkey CDS
Protein Id XP_033137854.1
Location complement(join(4396589..4396726,4396815..4397120,4397189..4397291,4397387..4397451,4397526..4397633,4397924..4398016,4398089..4398136,4398240..4398338,4398411..4398527,4398611..4398664,4398733..4398825,4398911..4398991,4399357..4399584,4399677..4399763,4399933..4400010,4400089..4400157,4400271..4400369,4400590..4400659,4400745..4401013,4401093..4401150,4401233..4401285,4402260..4402329,4402555..4402616,4403154..4403288,4403392..4403616,4403763..4403798))
Gene LOC103849529
GeneID 103849529
Organism Brassica rapa

Protein

Length 947aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033281963.1
Definition pre-mRNA-processing protein 40A isoform X3 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description pre-mRNA-processing protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12821        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005685        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006928        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007010        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008360        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016363        [VIEW IN EMBL-EBI]
GO:0016477        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0022603        [VIEW IN EMBL-EBI]
GO:0022604        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032465        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0040011        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048870        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051302        [VIEW IN EMBL-EBI]
GO:0051674        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070064        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCGAACAATCCTCCTCAGTCCTCTGGTGCCCAGTTTCGGGCGATGGTTCCTGGGCAACAAGGTCAGCAATTTGTTCCTGCAGCTTCACAACAGCCGTTTCATCACCCCTACGGACATGTACCACCAAATGTTCAAAGTCAGTTTTCTCAGCAGCTTTTTCCAGTGAGACCAGGTCAGCCTGGACATATTGCATCATCATCACCTCCAGTTGTAGGCTTTGGTACATCTGGACCACCTCCATTTTCTTCTTCATATTCACAACAACCAACTCCGCAGATGCATGCATCTGGTAGTGTCCCACCAGCAGCCAACTCTTGGCCTGCTCCTCCTGTAATTCAAAGTACAACACTTGTTTCCCCTGTTCAGCAGACACCAGCCACTCCCACTGACCCAGGAAATCTGACTCCACAATCTGCATCTGACTGGATGGAGCATACATCTGCTGATGGTAGAAAGTATTATTATAACAAGCAGACTAAACAATCAAGTTGGGAAAAACCTCTTGAACTGATGACACCACTTGAGAGGGCAGATGCATCCACTGTGTGGAAGGAATTTACAACAGCTGAAGGAAGGAAATATTATTATAACAAGGTTACAAAGGAGTCTAAGTGGACAATTCCGGAAGATTTAAAGTTAGCTCGGGAACAAGCCGAATTAGCTAGTGCAAAGAGGTCCCATTCCGAAGATGAATCGACCTCTCTATCCCGCATTACTGCATCCTCGTCTGATCTAGCTGTTAGCACTCCTGTTACCGCTGTTGTTCCCAGTACATCTTCAACAATTCCTGGGCATTCTACAAGTCCTATTCCAGCGGGTTTGGCTGTACCTGTCACCCGTCCTCCCCCTGTTGCTTCTGTTACTCCAACGTTTGCTGCAACTAGTGATACTGAGGCTACTGCAATGAAATTGGATAATTTATCGTCTCAGGGGGCATATGAATCAAATGATAGAGCGCCAGCACCAAATAATGAGGTTGATTATAAGGAAATTTCGGTGAATGGAAAATCCAATATGACACCTGCTGGTGACAAAGCAAACGTTGAGGAGCCGATGATGTATGCTACTAAGCAGGAGGCCAAAGCTGCTTTCAAGTCTCTTTTGGAATCTGTAAATGTTCAGTCCGACTGGACATGGGAACAGACAACGAAAGAGATTGTTCATGATAAAAGATATGGTGCTTTGAGGACACTCGGTGAGCGGAAACAAGCTTTTAACGAGTATCTCGGTCAACGGAAAAAAGTGGAAGCCGAGGAAAGGCGATGGAGACAGAAGAAAGCGCGGGAAGAATTTGTAAAGATGCTAGAGGAGTGTGAAGAATTATCATCATCCATGAAATGGAGGTTTGGCTTTCAGCTAATGAAAGAATCGTTGGTTCTTGTCTTTATTGTATGTGACGTATGTGCTAATAGAAACTTTTTCCTCACCAGCAAAGCTTTGAGTTTGTTTGAAAATGATGAGCGTTTTAAAGCTGTTGATCGCCCAAGGGATCGTGAAGATCTTTTTGACAATTATATTGTGGAACTTGAGAGGAAGGAAAGAGAGAAGGCAGTGGCAGAACATCGGCAGAAGATGGCAGAGTATCGGAAGTTTCTTGAAACCTGTGACTATATCAAAGCAAGTACACAATGGAGAAAAATTCAGGATAGACTGGAGGATGATGAAAGATGCTCATGTCTTGAAAAAATAGATCGTTTGATTGGTTTTGAGGATTACATTAATGACCTGGAGAAGGAGGAAGAGGAGCTGAAGAGGGTAGAGAAGGAACATGTTAGGCGCGCTGAAAGAAAAAATCGTGATGCATTTCGTACACTACTGGAAGAACATGTCGCTGCTGGCATCCTTACAGCCAAGACGTACTGGTTGGAATATTGCATTGAGGTAAGAGACTTGCCTCAATACCAAGCTGTTGCATCTAATTTGTCTGGCTCAACTCCGAAAGACTTGTTCGAAGATATCACGGAAGAATTAGACAAGCAGTATCACGAGGACAAGAGTCGCGTAAAGGATGCGATGAAGTCGAGGAAGGTTTCCATGGTCTCCTCATGGATGTTTGAAGATTTTAAATCTGCTCTTTCAGAAGATCTCAGTTCTCAACCAGTATCAGACATAAATTTAAAGCTCATATATAATGACTTGGTTGAGAGGATGAAGGAAAAAGAAGAAAAAGAAGCCAGAAAGTTTCAGCGTTTGGCTGAAGAGTTTACCAATCTTTTGCGCACTTTCAAGGAAATAAACGCAGCTTCAAATTGGGAAGATGTCAAACAACTAGTTGAAGAAAGTCAAGAGTACAGATCGATTGGAGATGATAATGTTAGCAGAGGGCTTTTTGAGGAATACATAACAAGTTTACAGGAAAAAGCAAAGGAGAAGGAGCGTAAGCGTGATGAGGAAAAGTTTCAGAGTAGGAAAGAGAAGGATAAGGAGGAGAAAGAGAAGCGGAAAGACAAGGAGAAGGAGAGAAGGGAAAAGGAAAGAGAACGCGAAAAAGAGAGGAGTAGCAAAAGGGAGGAATCGGATGGTGATGTAGATGTGAGTGAAGGTCAGAAAGAGGAGAAACGAAAAGGAAAAGATCGAGACAGAAAACATAGGAGACGCCATCACAATTCTGATGATGATGTCAGTTCTGATAGGGATGACAGAGAGGAGTCGAAGAAGTCATCATCCCGTAAACATGGTAATGATCGCAAAAAATCAAGAAAGCACGCAAACACACCAGAATCAGACAGTGAAAGTCGGCATAAAAGACAGAAGAAAGAGCAGCGTGAGAGTAGTCGTCGAGGTGGTAATGATGAGTTAGAGGATGGAGAGGTTGGGGAAGATGGTGAAATCAGACTTTAA
Protein:  
MSNNPPQSSGAQFRAMVPGQQGQQFVPAASQQPFHHPYGHVPPNVQSQFSQQLFPVRPGQPGHIASSSPPVVGFGTSGPPPFSSSYSQQPTPQMHASGSVPPAANSWPAPPVIQSTTLVSPVQQTPATPTDPGNLTPQSASDWMEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAELASAKRSHSEDESTSLSRITASSSDLAVSTPVTAVVPSTSSTIPGHSTSPIPAGLAVPVTRPPPVASVTPTFAATSDTEATAMKLDNLSSQGAYESNDRAPAPNNEVDYKEISVNGKSNMTPAGDKANVEEPMMYATKQEAKAAFKSLLESVNVQSDWTWEQTTKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWRFGFQLMKESLVLVFIVCDVCANRNFFLTSKALSLFENDERFKAVDRPRDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEDITEELDKQYHEDKSRVKDAMKSRKVSMVSSWMFEDFKSALSEDLSSQPVSDINLKLIYNDLVERMKEKEEKEARKFQRLAEEFTNLLRTFKEINAASNWEDVKQLVEESQEYRSIGDDNVSRGLFEEYITSLQEKAKEKERKRDEEKFQSRKEKDKEEKEKRKDKEKERREKEREREKERSSKREESDGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKSSSRKHGNDRKKSRKHANTPESDSESRHKRQKKEQRESSRRGGNDELEDGEVGEDGEIRL